An Evaluation of DNA Barcoding Using Genetic Programming-Based Process

摘要：

The DNA barcoding is a promising technique for identifications of biological species based on a relatively short sequence of COI gene. A research area to improve the DNA barcoding is to study the classification techniques that utilize common properties of DNA and amino acid sequences such as variable lengths of gene sequences, and the comparison of different reference genes. In this study, we evaluate a classification model for DNA barcoding induced by genetic programming. The proposed method can be adapted for both DNA and amino acid sequences. The performance is evaluated by representing the two types of sequences and one based on their properties. The proposed method evaluates common significant sites on the reference genes which are useful to differentiate between species.

关键词： DNA barcoding genetic programming classification simulation

作者: Masood Zamani David K.Y.Chiu

作者单位: School of Computer Science, University of Guelph, Guelph, Ontario, Canada

会议类型: 国际会议

会议名称: International Conference on Life System Modeling and Simulation,and International Conference on Intelligent Computing for Sustainable Energy and Environment(2010生命系统建模与仿真国际会议暨m2010可持续能源与环境智能计算国际会议)

会议地点: 无锡

会议语种:英文

页码: 298-306

在线出版日期: 2010-09-17（万方平台首次上网日期，不代表论文的发表时间）