SE: An algorithm for deriving sequence alignment from a pair of superimposed structures

摘要：

BackgroundGenerating sequence alignments from superimposed structures is an important step in structure comparison.Many programs apply a dynamic programming algorithm to generate the sequence alignment. It is sensitive to the gap penalty used and often includes spurious gaps and misalignments. Here we present a novel algorithm, Seed Extension (SE), for deriving sequence alignment from a pair of superimposed structures.

作者: Chin-Hsien Tai James J.Vincent Changhoon Kim Byungkook Lee

作者单位: Molecular Modeling and Bioinformatics Section, Laboratory of Molecular Biology, Center for Cancer Re Molecular Modeling and Bioinformatics Section, Laboratory of Molecular Biology, Center for Cancer Re

会议类型: 国际会议

会议名称: The 7th Asia-Pacific Bioinformatics Conference(第七届亚太生物信息学大会)

会议地点: 北京

会议语种:英文

页码: 827

在线出版日期: 2009-01-01（万方平台首次上网日期，不代表论文的发表时间）