A systematic analysis of the predicted human La protein targets identified a hepatitis B virus infection signature
The human La (hLa) protein functions in RNA metabolism and is activated by casein kinase 2 (CK2) phosphorylation.Hepatitis B virus (HBV) can exploit hLa to stabilize its RNA and promote its pathogenesis.To enhance our knowledge of host molecular pathways involved in HBV pathogenesis,a bioinformatic approach was used to generate an expression profile of all predicted target genes of CK2-activated hLa in HBV-infected cells.A computerized literature search was performed to identify English language studies of HBV,hLa,and CK2-related molecules.The data were pooled and the genes were classified in three functional groups by gene ontology (GO) analysis.HBV,hLa,and CK2 targets were predicted,respectively,by a computational method,followed by screening for matching gene symbols in the NCBI human sequences,and GO,pathway,and network analyses.hLa targets and respective networks in the viral mechanisms of HBV were obtained by the final integrative analysis.Thirty-seven hub genes were identified by overlap calculation,suggesting that hLa may play an important role in the development and progression of HBV through cytokine-cytokine receptor interaction,hematopoietic cell lineage,cell adhesion molecules (CAMs),antigen processing and presentation,Jak-STAT signaling pathway,natural killer cell mediated cytotoxicity,apoptosis,T cell receptor signaling pathway,complement and coagulation cascades,protein export,and other pathways.Our data may help researchers to predict the molecular mechanisms of hLa in the development and progression of HBV through CK2 comprehensively.Moreover,the present data indicate that hLa-targets may be a series of promising candidates for HBV.
hepatitis B virus human La protein casine kinase 2 systematic analysis
TANG Jing LIU Gao-Lin
Department of Pharmacy,Shanghai First People’s Hospital,School of Medicine,Shanghai JiaoTong University,Shanghai,China
国内会议
南宁
英文
1-23
2013-11-01（万方平台首次上网日期，不代表论文的发表时间）